ENCODE
Assays and standards Glossary File formats Software tools Pipelines Data organization Release policy Schemas Help Using the portal Cart REST API Citing ENCODE FAQ Project Overview …
ENCODE Encyclopedia
The ENCODE Project aims to map all functional elements of the human and mouse genomes. Progress toward this goal has involved over ten thousand epigenomic experiments utilizing a wide array of …
FAQ – ENCODE
The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells …
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Search – ENCODE
Project: ENCODE Library construction method: capped RNA enrichment Experiment ENCSR841GXY released PRO-cap in peripheral blood mononuclear cell Homo sapiens peripheral blood …
ENCORE Matrix – ENCODE
The ENCORE project aims to study protein-RNA interactions by creating a map of RNA binding proteins (RBPs) encoded in the human genome and identifying the RNA elements that the RBPs bind to.
ATAC-seq Data Standards and Processing Pipeline – ENCODE
The ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment.
Series search – ENCODE
Organism: Mus musculus Stages: P14, A2 Lab: Michael Snyder, Stanford Project: ENCODE Series ENCSR909AOH released
Epigenomes from four individuals (ENTEx) - ENCODE
ENTEx is a collaboration with the GTEx Consortium to profile approximately 30 overlapping tissues from four donors. Publication: . Additional ancillary files are ...
eCLIP Data Standards – ENCODE
Antibodies must be characterized according to standards set by the ENCODE Consortium. Please see the linked documents for transcription factor standards (May 2016), histone modification and …